Data
QSAR-TID-19907

QSAR-TID-19907

active Sparse_ARFF Publicly available Visibility: public Uploaded 06-10-2015 by Noureddin Sadawi
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Author: Dr Ivan Olier, Dr Jeremy Besnard, Dr Noureddin Sadawi, Dr Larisa Soldatova, Dr Crina Grosan, Prof Ross King, Dr Richard Bickerton, Prof Andrew Hopkins and Dr Willem van Hoorn Source: MetaQSAR project - September 2015 Please cite: This dataset contains QSAR data (from ChEMBL version 17) showing activity values (unit is pseudo-pCI50) of several compounds on drug target TID: 19907, and it has 13 rows and 1026 features (including IDs and class feature: MOLECULE_CHEMBL_ID and MEDIAN_PXC50). The features represent FCFP 1024bit Molecular Fingerprints which were generated from SMILES strings. They were obtained using the Pipeline Pilot program, Dassault Systèmes BIOVIA. Generating Fingerprints does not usually require missing value imputation as all bits are generated.

1026 features

MEDIAN_PXC50 (target)numeric11 unique values
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MOLECULE_CHEMBL_ID (row identifier)nominal13 unique values
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0 missing
FCFP6_1024_744numeric1 unique values
0 missing
FCFP6_1024_1000numeric1 unique values
0 missing
FCFP6_1024_233numeric1 unique values
0 missing
FCFP6_1024_489numeric1 unique values
0 missing
FCFP6_1024_745numeric1 unique values
0 missing
FCFP6_1024_1001numeric1 unique values
0 missing
FCFP6_1024_234numeric2 unique values
0 missing
FCFP6_1024_490numeric1 unique values
0 missing
FCFP6_1024_746numeric1 unique values
0 missing
FCFP6_1024_1002numeric1 unique values
0 missing
FCFP6_1024_235numeric1 unique values
0 missing
FCFP6_1024_491numeric1 unique values
0 missing
FCFP6_1024_747numeric1 unique values
0 missing
FCFP6_1024_1003numeric2 unique values
0 missing
FCFP6_1024_236numeric1 unique values
0 missing
FCFP6_1024_492numeric1 unique values
0 missing
FCFP6_1024_748numeric2 unique values
0 missing
FCFP6_1024_1004numeric1 unique values
0 missing
FCFP6_1024_237numeric1 unique values
0 missing
FCFP6_1024_493numeric2 unique values
0 missing
FCFP6_1024_749numeric1 unique values
0 missing
FCFP6_1024_1005numeric1 unique values
0 missing
FCFP6_1024_238numeric1 unique values
0 missing
FCFP6_1024_494numeric1 unique values
0 missing
FCFP6_1024_750numeric1 unique values
0 missing
FCFP6_1024_1006numeric1 unique values
0 missing
FCFP6_1024_239numeric1 unique values
0 missing
FCFP6_1024_495numeric1 unique values
0 missing
FCFP6_1024_751numeric1 unique values
0 missing
FCFP6_1024_1007numeric2 unique values
0 missing
FCFP6_1024_240numeric2 unique values
0 missing
FCFP6_1024_496numeric1 unique values
0 missing
FCFP6_1024_752numeric1 unique values
0 missing
FCFP6_1024_1008numeric1 unique values
0 missing
FCFP6_1024_241numeric2 unique values
0 missing
FCFP6_1024_497numeric1 unique values
0 missing
FCFP6_1024_753numeric1 unique values
0 missing
FCFP6_1024_1009numeric1 unique values
0 missing
FCFP6_1024_242numeric1 unique values
0 missing
FCFP6_1024_498numeric2 unique values
0 missing
FCFP6_1024_754numeric1 unique values
0 missing
FCFP6_1024_1010numeric1 unique values
0 missing
FCFP6_1024_243numeric1 unique values
0 missing
FCFP6_1024_499numeric1 unique values
0 missing
FCFP6_1024_755numeric1 unique values
0 missing
FCFP6_1024_1011numeric1 unique values
0 missing
FCFP6_1024_244numeric1 unique values
0 missing
FCFP6_1024_500numeric1 unique values
0 missing
FCFP6_1024_756numeric1 unique values
0 missing
FCFP6_1024_1012numeric1 unique values
0 missing
FCFP6_1024_245numeric1 unique values
0 missing
FCFP6_1024_501numeric1 unique values
0 missing
FCFP6_1024_757numeric1 unique values
0 missing
FCFP6_1024_1013numeric1 unique values
0 missing
FCFP6_1024_246numeric1 unique values
0 missing
FCFP6_1024_502numeric1 unique values
0 missing
FCFP6_1024_758numeric1 unique values
0 missing
FCFP6_1024_1014numeric1 unique values
0 missing
FCFP6_1024_247numeric1 unique values
0 missing
FCFP6_1024_503numeric2 unique values
0 missing
FCFP6_1024_759numeric1 unique values
0 missing
FCFP6_1024_1015numeric2 unique values
0 missing
FCFP6_1024_248numeric1 unique values
0 missing
FCFP6_1024_504numeric1 unique values
0 missing

62 properties

13
Number of instances (rows) of the dataset.
1026
Number of attributes (columns) of the dataset.
0
Number of distinct values of the target attribute (if it is nominal).
0
Number of missing values in the dataset.
0
Number of instances with at least one value missing.
1025
Number of numeric attributes.
1
Number of nominal attributes.
0
Percentage of binary attributes.
0
Second quartile (Median) of standard deviation of attributes of the numeric type.
Maximum entropy among attributes.
-2.36
Minimum kurtosis among attributes of the numeric type.
0
Percentage of instances having missing values.
Third quartile of entropy among attributes.
13
Maximum kurtosis among attributes of the numeric type.
0
Minimum of means among attributes of the numeric type.
0
Percentage of missing values.
13
Third quartile of kurtosis among attributes of the numeric type.
4.69
Maximum of means among attributes of the numeric type.
Minimal mutual information between the nominal attributes and the target attribute.
99.9
Percentage of numeric attributes.
0
Third quartile of means among attributes of the numeric type.
Maximum mutual information between the nominal attributes and the target attribute.
The minimal number of distinct values among attributes of the nominal type.
0.1
Percentage of nominal attributes.
Third quartile of mutual information between the nominal attributes and the target attribute.
The maximum number of distinct values among attributes of the nominal type.
-3.61
Minimum skewness among attributes of the numeric type.
First quartile of entropy among attributes.
3.61
Third quartile of skewness among attributes of the numeric type.
3.61
Maximum skewness among attributes of the numeric type.
0
Minimum standard deviation of attributes of the numeric type.
3.22
First quartile of kurtosis among attributes of the numeric type.
0
Third quartile of standard deviation of attributes of the numeric type.
0.55
Maximum standard deviation of attributes of the numeric type.
Percentage of instances belonging to the least frequent class.
0
First quartile of means among attributes of the numeric type.
Standard deviation of the number of distinct values among attributes of the nominal type.
Average entropy of the attributes.
Number of instances belonging to the least frequent class.
First quartile of mutual information between the nominal attributes and the target attribute.
7.3
Mean kurtosis among attributes of the numeric type.
0
Number of binary attributes.
-2.18
First quartile of skewness among attributes of the numeric type.
0.08
Mean of means among attributes of the numeric type.
0
First quartile of standard deviation of attributes of the numeric type.
0.39
Average class difference between consecutive instances.
Average mutual information between the nominal attributes and the target attribute.
Second quartile (Median) of entropy among attributes.
Entropy of the target attribute values.
An estimate of the amount of irrelevant information in the attributes regarding the class. Equals (MeanAttributeEntropy - MeanMutualInformation) divided by MeanMutualInformation.
3.22
Second quartile (Median) of kurtosis among attributes of the numeric type.
78.92
Number of attributes divided by the number of instances.
Average number of distinct values among the attributes of the nominal type.
0
Second quartile (Median) of means among attributes of the numeric type.
Number of attributes needed to optimally describe the class (under the assumption of independence among attributes). Equals ClassEntropy divided by MeanMutualInformation.
0.99
Mean skewness among attributes of the numeric type.
Second quartile (Median) of mutual information between the nominal attributes and the target attribute.
Percentage of instances belonging to the most frequent class.
0.05
Mean standard deviation of attributes of the numeric type.
2.18
Second quartile (Median) of skewness among attributes of the numeric type.
Number of instances belonging to the most frequent class.
Minimal entropy among attributes.

4 tasks

1 runs - estimation_procedure: Custom 10-fold Crossvalidation - target_feature: MEDIAN_PXC50
0 runs - estimation_procedure: 50 times Clustering
0 runs - estimation_procedure: 50 times Clustering
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